How Proteins Fold in 3D: Anfinsen, Levinthal, AlphaFold | Part 5 | Stryer Chapter 2
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How Proteins Fold in 3D: Anfinsen, Levinthal, AlphaFold | Part 5 | Stryer Chapter 2
1 просмотр · 20 часов назад
Educationalogy
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1 просмотр · 20 часов назад
Part 5 of 5 of Stryer Biochemistry Chapter 2 (section 2.7), explained with 3D animation and labels.
In this part:
Anfinsen’s ribonuclease experiment: unfolding with urea and beta mercaptoethanol, and refolding
Scrambled ribonuclease and why the native disulfides win
Aggregation and chaperones
Which amino acids prefer helices, sheets and turns (Table 2.3)
Cooperative folding and the half folded solution
Levinthal’s paradox and cumulative selection
Nucleation condensation and the folding funnel
Predicting structure: CASP and AlphaFold
Misfolding, amyloid and Alzheimer disease
Posttranslational modifications, GFP and protein cleavage
Chapter summary
Chapters:
0:00 2.7 Sequence determines structure
0:10 2.7 Ribonuclease
1:10 2.7 Denaturing ribonuclease
2:18 2.7 Sequence specifies conformation
3:38 2.7 Scrambled ribonuclease
5:07 2.7 Aggregation and chaperones
5:45 2.7 Self-check question
6:30 2.7 Propensities for helices, sheets, and turns
7:11 2.7 Table 2.3
7:30 2.7 Why these preferences?
8:32 2.7 Can we predict secondary structure?
10:05 2.7 Folding is cooperative
11:36 2.7 The half-folded solution
12:45 2.7 Levinthal’s paradox
14:25 2.7 Cumulative selection
15:17 2.7 Marginal stability
17:08 2.7 Figure 2.57: a folding pathway
18:01 2.7 The folding funnel
19:08 2.7 Predicting structure from sequence
20:37 2.7 CASP and AlphaFold
22:16 2.7 Misfolding and disease
24:33 2.7 Posttranslational modifications
25:58 2.7 Green fluorescent protein
27:04 2.7 Cleavage after synthesis
28:08 Summary
Watch all 5 parts of this chapter in the playlist on my channel.
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Based on Stryer Biochemistry, 10th edition, Chapter 2. Made for education.
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