Introduction to Snakemake - October 2025 (1 of 5)

This video provides an introduction to Snakemake (https://snakemake.readthedocs.io/en/s..., a workflow management system designed to create reproducible and scalable data analyses. The video was recorded live during the course “Reproducible and Scalable Research with Snakemake and Software Containers” (https://www.sib.swiss/training/course...) streamed on 10 October 2025. Target audience: PhD students, postdoctoral and other researchers in the life sciences and bioinformaticians from both academia and industry who have an interest in increasing the reproducibility of their work. Speaker(s): Antonin Thiébaut, Centre Hospitalier Universitaire Vaudois, Switzerland. Rafael Riudavets Puig, ETH Zürich, Switzerland. 00:00 Reproducibility 09:04 Workflow Management Systems 15:24 Snakemake Any questions about this video? Contact us training@sib.swiss