Whole Genome Sequence Analysis | Bacterial Genome Analysis | Bioinformatics 101 for Beginners

This tutorial shows you how to analyze whole genome sequence of a bacterial genome. A bioinformatics tutorial on Bacterial Whole Genome Sequence Analysis | Comparative Genomics *Thank me with a Coffee*: https://www.buymeacoffee.com/informat... *Tip me on Paypal*: https://www.paypal.com/paypalme/thein... *One-on-One coaching*: https://calendly.com/bioinformaticscoach *Consultation: https://calendly.com/bioinformaticscoach Reach out bioinformaticscoach@gmail.com Get more bioinformatics tutorials on Patreon:   / bigdataanalytics   Materials __________ Source of Data: https://www.ncbi.nlm.nih.gov/pmc/arti... Github repository of pipeline : github.com/vappiah/bacterial-genomics-tutorial How to setup Linux in Windows    • Quickly Install and use Linux in Windows   How to install Anaconda in Linux Linux    • Install , Configure and Run Anaconda in  a...   MacOS    • How to Install and Run Anaconda in  MacOS ...   - GUI Installer    • Install, Configure and Run Anaconda in ANY...   - Command line installer How to install BRIG    • A bioinformatics tutorial on how to Instal...   Other useful videos    • Roary pan genome tutorial | Bioinformatics...   Pan genome Analysis How to find antimicrobial resistance genes    • Bioinformatics for Beginners | Antimicrobi...   Genome visualization    • Genome Visualization Tutorials   Reading fasta and genbank files    • Python for Bioinformatics - Intermediate   Chapters 00:01 Introduction 00:26 Analysis workflow 00:48 Where to find the scripts 01:59 Setting up the analysis pipeline 08:43 Running the commands download the example data fastqc quality control trim fastqreads with sickle genome assembly with spades evaluating the genome assembly reference guided scaffolding of the contigs genome sequence annotation with prokka multi locus sequence typing antimicrobial resistance genes detection with abricate pangenome analysis with roary genome comparison with BRIG 47:38 Explaining results for ANI-Dendogram 52:36 Explaining results for Pangenome Analysis 58:01 MLST output 58:37 AMR output 58:59 Genome map Tools Used Anaconda for software installation SPADES for genome assembly PROKKA for genome annotation ROARY for pangenome analysis Abricate for antimicrobial gene detection BRIG for sequence visualization Python for data visualization Pilon assembly polishing FASTQC for Quality Control QUAST for evaluating genome assembly RagTag for reference guided scaffolding quality control genome assembly genome annotation prokka roary pangenome analysis genome visualization bacteria #bioinformatics #bioinformática #bioinformaticsforbeginners #linuxforbeginners #genomesequencing #genomics #genome #microbiology #Bioinformatics #Microbiology #DataScience #Genomics